Package that provides tools for brain MRI Deep Learning pre-processing.

Note

This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the gallery for the big picture.

brainprep.cortical.mri_conversion(fsdir, sid)[source]¶

Convert some modality in NiFTI format.

Parameters:

fsdir : str

the FreeSurfer subjects directory ‘SUBJECTS_DIR’.

sid : str

the subject identifier

Returns:

niifiles : dict

the converted modalities.