Package that provides tools for brain MRI Deep Learning pre-processing.
API documentation of brainprep¶
brainprep¶
Package that provides tools for brain MRI Deep Leanring PreProcessing.
- Functions:
brainprep.spatial¶
Common functions to spatialy normalize the data.
brainprep.qc¶
Usefull automatic quality control (QC) functions.
brainprep.color_utils¶
Utility methods to print the results in a terminal using term colors.
- Classes:
- Functions:
brainprep.connectivity¶
Import pre-processed images and confounds from fMRIPrep and generate connectivity matrices based on standard parcellations and metrics.
- Functions:
brainprep.deface¶
Common defacing functions.
- Functions:
brainprep.cortical¶
Common cortical functions.
brainprep.plotting¶
Usefull plotting functions.
brainprep.utils¶
Module that contains some utility functions.
brainprep.tbss¶
FSL TBSS tools.
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