Package that provides tools for brain MRI Deep Learning pre-processing.
Search in API documentation of BRAINPREPΒΆ
- brainprep.apply_affine
- brainprep.apply_mask
- brainprep.bet2
- brainprep.biasfield
- brainprep.check_command
- brainprep.check_version
- brainprep.color_utils.HEX
- brainprep.color_utils.attr
- brainprep.color_utils.colored
- brainprep.color_utils.fg
- brainprep.color_utils.print_command
- brainprep.color_utils.print_error
- brainprep.color_utils.print_result
- brainprep.color_utils.print_subtitle
- brainprep.color_utils.print_title
- brainprep.color_utils.stylize
- brainprep.connectivity.func_connectivity
- brainprep.cortical.interhemi_projection
- brainprep.cortical.interhemi_surfreg
- brainprep.cortical.localgi
- brainprep.cortical.mri_conversion
- brainprep.cortical.recon_all
- brainprep.cortical.recon_all_custom_wm_mask
- brainprep.cortical.recon_all_longitudinal
- brainprep.cortical.stats2table
- brainprep.deface
- brainprep.deface.deface
- brainprep.dtifit
- brainprep.execute_command
- brainprep.func_connectivity
- brainprep.interhemi_projection
- brainprep.interhemi_surfreg
- brainprep.localgi
- brainprep.mri_conversion
- brainprep.plotting.get_fsreconall_masks
- brainprep.plotting.plot_fsreconall
- brainprep.plotting.plot_hists
- brainprep.plotting.plot_images
- brainprep.qc.check_files
- brainprep.qc.compute_mean_correlation
- brainprep.qc.parse_cat12vbm_qc
- brainprep.qc.parse_cat12vbm_report
- brainprep.qc.parse_cat12vbm_roi
- brainprep.qc.parse_fsreconall_stats
- brainprep.qc.plot_pca
- brainprep.recon_all
- brainprep.recon_all_custom_wm_mask
- brainprep.recon_all_longitudinal
- brainprep.register_affine
- brainprep.reorient2std
- brainprep.scale
- brainprep.spatial.apply_affine
- brainprep.spatial.apply_mask
- brainprep.spatial.bet2
- brainprep.spatial.biasfield
- brainprep.spatial.register_affine
- brainprep.spatial.reorient2std
- brainprep.spatial.scale
- brainprep.stats2table
- brainprep.tbss.dtifit
- brainprep.tbss.tbss_1_preproc
- brainprep.tbss.tbss_2_reg
- brainprep.tbss.tbss_3_postreg
- brainprep.tbss.tbss_4_prestats
- brainprep.tbss_1_preproc
- brainprep.tbss_2_reg
- brainprep.tbss_3_postreg
- brainprep.tbss_4_prestats
- brainprep.utils.check_command
- brainprep.utils.check_version
- brainprep.utils.create_clickable
- brainprep.utils.execute_command
- brainprep.utils.get_bids_keys
- brainprep.utils.listify
- brainprep.utils.load_images
- brainprep.utils.ungzip_file
- brainprep.utils.write_matlabbatch
- brainprep.workflow.brainprep_cat12vbm
- brainprep.workflow.brainprep_cat12vbm_qc
- brainprep.workflow.brainprep_cat12vbm_roi
- brainprep.workflow.brainprep_deface
- brainprep.workflow.brainprep_deface_qc
- brainprep.workflow.brainprep_fmriprep
- brainprep.workflow.brainprep_fmriprep_conn
- brainprep.workflow.brainprep_fsreconall
- brainprep.workflow.brainprep_fsreconall_longitudinal
- brainprep.workflow.brainprep_fsreconall_qc
- brainprep.workflow.brainprep_fsreconall_summary
- brainprep.workflow.brainprep_mriqc
- brainprep.workflow.brainprep_mriqc_summary
- brainprep.workflow.brainprep_prequal
- brainprep.workflow.brainprep_prequal_qc
- brainprep.workflow.brainprep_quasiraw
- brainprep.workflow.brainprep_quasiraw_qc
- brainprep.workflow.brainprep_tbss
- brainprep.workflow.brainprep_tbss_preproc
- brainprep.workflow.cat12vbm.brainprep_cat12vbm
- brainprep.workflow.cat12vbm.brainprep_cat12vbm_qc
- brainprep.workflow.cat12vbm.brainprep_cat12vbm_roi
- brainprep.workflow.deface.brainprep_deface
- brainprep.workflow.deface.brainprep_deface_qc
- brainprep.workflow.fmriprep.brainprep_fmriprep
- brainprep.workflow.fmriprep.brainprep_fmriprep_conn
- brainprep.workflow.fsreconall.brainprep_fsreconall
- brainprep.workflow.fsreconall.brainprep_fsreconall_longitudinal
- brainprep.workflow.fsreconall.brainprep_fsreconall_qc
- brainprep.workflow.fsreconall.brainprep_fsreconall_summary
- brainprep.workflow.mriqc.brainprep_mriqc
- brainprep.workflow.mriqc.brainprep_mriqc_summary
- brainprep.workflow.mriqc.compute_score
- brainprep.workflow.mriqc.detect_outliers
- brainprep.workflow.mriqc.filter_iqms
- brainprep.workflow.mriqc.load_iqms
- brainprep.workflow.mriqc.merge_dfs
- brainprep.workflow.mriqc.plot_iqms
- brainprep.workflow.mriqc.query_api
- brainprep.workflow.prequal.brainprep_prequal
- brainprep.workflow.prequal.brainprep_prequal_qc
- brainprep.workflow.quasiraw.brainprep_quasiraw
- brainprep.workflow.quasiraw.brainprep_quasiraw_qc
- brainprep.workflow.tbss.brainprep_tbss
- brainprep.workflow.tbss.brainprep_tbss_preproc
- brainprep.write_matlabbatch
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