Package that provides tools for brain MRI Deep Learning pre-processing.
Note
This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the gallery for the big picture.
- brainprep.workflow.cat12vbm.brainprep_cat12vbm_qc(img_regex, qc_regex, outdir, brainmask_regex=None, extra_img_regex=None, ncr_thr=4.5, iqr_thr=4.5, corr_thr=0.5)[source]ΒΆ
Define the CAT12 VBM quality control workflow.
- Parameters:
img_regex : str
regex to the CAT12 VBM image files for all subjects.
qc_regex : str
regex to the CAT12 VBM quality control xml files for all subjects.
outdir : str
the destination folder.
brainmask_regex : str, default None
regex to the brain mask files for all subjects. If one file is provided, we assume subjects are in the same referential.
extra_img_regex : list of str, default None
list of regex to extra image to diplay in quality control.
ncr_thr : float, default 4.5
control the quality control threshold on the NCR score.
iqr_thr : float, default 4.5
control the quality control threshold on the IQR score.
corr_thr : float, default 0.5
control the quality control threshold on the correlation score.
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