Package that provides tools for brain MRI Deep Learning pre-processing.
Note
This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the gallery for the big picture.
- brainprep.workflow.mriqc.brainprep_mriqc(rawdir, subjid, outdir='/out', workdir='/work', mriqc='mriqc')[source]ΒΆ
Define the mriqc pre-processing workflow.
- Parameters:
rawdir : str
the BIDS raw folder.
subjid : str
the subject identifier.
outdir : str
the destination folder.
workdir : str
the working folder.
mriqc : str
path to the mriqc binary.
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