Package that provides tools for brain MRI Deep Learning pre-processing.

Note

This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the gallery for the big picture.

brainprep.cortical.stats2table(fsdir, outdir)[source]¶

Generate text/ascii tables of freesurfer parcellation stats data ‘?h.aparc.stats’ for both templates (Desikan & Destrieux) and ‘aseg.stats’.

Parameters:

fsdir : str

the FreeSurfer working directory with all the subjects.

outdir : str

the destination folder.

Returns:

statfiles : list of str

The FreeSurfer summary stats.