Package that provides tools for brain MRI Deep Learning pre-processing.

Note

This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the gallery for the big picture.

brainprep.workflow.prequal.brainprep_prequal_qc(data_regex, outdir, sub_idx=-4, thr_low=0.3, thr_up=0.75)[source]¶

Define the dMRI pre-processing quality control workflow.

Parameters:

datadir : str

regex to the dmriprep ‘stats.csv’ files.

outdir : str

path to the destination folder.

sub_idx : int, default -4

the position of the subject identifier in the input path.

thr_low : float, default 0.3

lower treshold for outlier selection.

thr_up : float, default 0.75

upper treshold for outlier selection.