Package that provides tools for brain MRI Deep Learning pre-processing.

Note

This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the gallery for the big picture.

brainprep.workflow.tbss.brainprep_tbss(outdir, use_fmrib58_fa_mean_and_skel=True, target=None, target_skel=None, threshold=0.2)[source]¶

Define TBSS workflow.

Parameters:

outdir : str

the TBSS destination folder.

use_fmrib58_fa_mean_and_skel : bool, default True

use the FMRIB58_FA mean FA image and its derived skeleton instead of the mean of the subjects.

target : str, default None

optionally define a target image to use during the non-linear registration, otherwise use the FMRIB58_FA_1mm target.

target_skel : str, default None

optionally define a target skeleton image for TBSS prestats.

threshold : float, default 0.2

threshold applied to the mean FA skeleton.