Package that provides tools for brain MRI Deep Learning pre-processing.
Note
This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the gallery for the big picture.
- brainprep.spatial.reorient2std(imfile, stdfile, check_pkg_version=False)[source]ΒΆ
Reorient the MRI image to match the approximate orientation of the standard template images (MNI152).
Note
This function is based on FSL.
- Parameters:
imfile : str
the input image.
stdfile : str
the reoriented image file.
check_pkg_version : bool, default False
optionally check the package version using dpkg.
- Returns:
stdfile : str
the generated file.
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