Package that provides tools for brain MRI Deep Learning pre-processing.

Note

This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the gallery for the big picture.

brainprep.workflow.quasiraw.brainprep_quasiraw(anatomical, mask, outdir, target=None, no_bids=False)[source]¶

Define quasi-raw pre-processing workflow.

Parameters:

anatomical : str

path to the anatomical T1w Nifti file.

mask : str

a binary mask to be applied.

outdir : str

the destination folder.

target : str

a custom target image for the registration.

no_bids : bool

set this option if the input files are not named following the BIDS hierarchy.