Package that provides tools for brain MRI Deep Learning pre-processing.

Note

This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the gallery for the big picture.

brainprep.plotting.plot_images(nii_files, cut_coords, outdir)[source]¶

Plot images on a subject basis.

Parameters:

img_files : list of n-uplet (n_subjects, n_path)

path to images.

cut_coords : list of int (n_path, 3)

the MNI coordinates of the point where the orthogonal cut is performed.

outdir : str

the destination folder.

Returns:

snaps : list of str

the generated snaps.

snapdir : str

the folder that contains all results.