Package that provides tools for brain MRI Deep Learning pre-processing.

Note

This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the gallery for the big picture.

brainprep.workflow.mriqc.plot_iqms(data, dtype, outdir, rm_outliers=False)[source]¶

Make a violin plot of the api and user IQMs.

Parameters:

data : DataFrame

a table including the api and uer data. Must have a column labeled ‘source’ with ‘user’ or ‘api’ defined.

dtype : str

the data type in the input table.

outdir : str

the destination folder.

rm_outliers : bool, default False

remove outliers from the API data.

Returns:

A violin plot of each MRIQC metric, comparing the user-level data to

the API data.