Package that provides tools for brain MRI Deep Learning pre-processing.
Note
This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the gallery for the big picture.
- brainprep.plotting.plot_fsreconall(fs_dirs, outdir, include_cerebellum=False)[source]ΒΆ
Plot images on a subject basis.
- Parameters:
fs_dirs : list of str
list of FreeSurfer recon-all generated directories.
outdir : str
the destination folder.
include_cerebellum : bool, default False
include the cerebellum as a structure of interest.
- Returns:
snaps : list of str
the generated snaps.
snapdir : str
the folder that contains all results.
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