Package that provides tools for brain MRI Deep Learning pre-processing.

Note

This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the gallery for the big picture.

brainprep.workflow.quasiraw.brainprep_quasiraw_qc(img_regex, outdir, brainmask_regex=None, extra_img_regex=None, corr_thr=0.5)[source]¶

Define the quasi-raw quality control workflow.

Parameters:

img_regex : str

regex to the quasi raw image files for all subjects.

outdir : str

the destination folder.

brainmask_regex : str, default None

regex to the brain mask files for all subjects. If one file is provided, we assume subjects are in the same referential.

extra_img_regex : list of str, default None

list of regex to extra image to diplay in quality control.

corr_thr : float, default 0.5

control the quality control threshold on the correlation score.