Package that provides tools for brain MRI Deep Learning pre-processing.
Note
This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the gallery for the big picture.
- brainprep.workflow.fmriprep.brainprep_fmriprep(anatomical, functionals, subjid, descfile, fsdir, outdir='/out', workdir='/work', fmriprep='fmriprep')[source]ΒΆ
Define the fmriprep pre-processing workflow.
- Parameters:
anatomical : str
path to the anatomical T1w Nifti file.
functionals : list of str
path to the functional Nifti files.
subjid : str
the subject identifier.
descfile : str
the dataset description file. (bids)
fsdir : str
Path to existing FreeSurfer subjects directory to reuse.
outdir : str
the destination folder.
workdir : str
the working folder.
fmriprep : str
path to the fmriprep binary.
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